PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_003962-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 548aa    MW: 59208.1 Da    PI: 4.7909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_003962-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11364406754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  NNU_003962-RA 364 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 406
                    79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16360426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9363406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15364419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.91E-13364410No hitNo description
CDDcd048731.59E-6477518No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MLSRVNGVVW MEEPGEEEDD VSWTRNNVGG GADNKDEMGS LSTFKSMLED DWYVNSNGNP  60
SHHDFQTIQS HQEIKDIAFS SNPSAETLLL QPVDSSSSCS PSSVFNIDPS QVQSFLPPKS  120
CFSSLLNVVC NNPFENGFDL GCDPGFLAPL QGTQSSGSPV LANRGSGVLS GFNGLTTDGQ  180
MSTPDLSSNS QFPSTRLLPL AENGCAVGGS FSSIGFGGFE GSANNLFLNR SKVLRPLEXF  240
PPVGAQPTLF QKRAAFRQNS AAAAGNSVLM GSESCRVSAS VEENKGKGEL EEDQEKKRKN  300
NEDDEVEEGS VDGSGLNYDS DEAMEINKVD EIVKNGGNSS IANSTVTGVD QKGKKKGLPA  360
KNLMAERRRR KKLNDRLYML RSVVPKISKM DRASILGDAI DYLKELLQRI NDLHNELEST  420
PPGSSMPSST SFHPLTPTPP TLPCRVKEEL CPSSLPSPNN QPARVEVRVR EGRAVNIHMF  480
CARRPGLLLS TMKALDTLGL DIQQAVISCF NGFALDVFRA EQCKEGPDVL PEDIKAVLLS  540
SAGFHGMM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353371KKKGLPAKNLMAERRRRKK
2365372ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250549.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-157ICE1_ARATH; Transcription factor ICE1
TrEMBLS4WVT00.0S4WVT0_9R
STRINGVIT_14s0068g01200.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-116bHLH family protein